Dr Michael Payne

Books

Book Chapters

Edited Books

Journal Articles

Journal articles | 2025

Bandaranayake S; Williamson S; Stewart J; Payne M; Kaur S; Pavic A; Lan R, 2025, 'Comparative genomic analysis of Salmonella enterica serovar Typhimurium isolates from the chicken production chain and table egg livestock in New South Wales, Australia', Food Microbiology, 132,

Journal articles | 2024

Bandaranayake S; Williamson S; Stewart J; Payne M; Kaur S; Wang Q; Sintchenko V; Pavic A; Lan R, 2024, 'Genomic diversity of Salmonella enterica serovar Typhimurium isolated from chicken processing facilities in New South Wales, Australia', Frontiers in Microbiology, 15,

Journal articles | 2024

Cheney L; Payne M; Kaur S; Lan R, 2024, 'SaLTy: a novel Staphylococcus aureus Lineage Typer', Microbial Genomics, 10,

Journal articles | 2024

Luo Y; Payne M; Kaur S; Octavia S; Lan R, 2024, 'Genomic evidence of two-staged transmission of the early seventh cholera pandemic', Nature Communications, 15,

Journal articles | 2024

Luu LDW; Rafique R; Payne M; Octavia S; Robson J; Sintchenko V; Lan R, 2024, 'Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing', Journal of Clinical Microbiology, 62,

Journal articles | 2024

Okoh EB; Payne M; Lan R; Riegler M; Chapman TA; Bogema DR, 2024, 'A Multilocus Sequence Typing Scheme for Rapid Identification of Xanthomonas citri Based on Whole-Genome Sequencing Data', Phytopathology, 114, pp. 1480 - 1489,

Journal articles | 2024

Payne M; Hu D; Wang Q; Sullivan G; Graham RM; Rathnayake IU; Jennison AV; Sintchenko V; Lan R, 2024, 'DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance', Bioinformatics, 40,

Journal articles | 2024

Payne M; Williamson S; Wang Q; Zhang X; Sintchenko V; Pavic A; Lan R, 2024, 'Emergence of Poultry-Associated Human Salmonella enterica Serovar Abortusovis Infections, New South Wales, Australia', Emerging Infectious Diseases, 30, pp. 691 - 700,

Journal articles | 2024

Wu R; Payne M; Zhang L; Lan R, 2024, 'Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses', Msystems, 9,

Journal articles | 2023

Luo L; Payne M; Wang Q; Kaur S; Rathnayake IU; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka MM; Jennison AV; Sintchenko V; Lan R, 2023, 'Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis', Microbiology Spectrum, 11,

Journal articles | 2023

Luo Y; Payne M; Kaur S; Octavia S; Jiang J; Lan R, 2023, 'Emergence and genomic insights of non-pandemic O1 Vibrio cholerae in Zhejiang, China', Microbiology Spectrum, 11,

Journal articles | 2023

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, 'Genomic epidemiology and multilevel genome typing of Bordetella pertussis', Emerging Microbes and Infections, 12,

Journal articles | 2022

Kaur S; Payne M; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2022, 'MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens', Database, 2022,

Journal articles | 2022

Luo Y; Ye J; Payne M; Hu D; Jiang J; Lan R, 2022, 'Genomic Epidemiology of Vibrio cholerae O139, Zhejiang Province, China, 1994–2018', Emerging Infectious Diseases, 28, pp. 2253 - 2260,

Journal articles | 2022

Zhang X; Payne M; Kaur S; Lan R, 2022, 'Improved Genomic Identification, Clustering, and Serotyping of Shiga Toxin-Producing Escherichia coli Using Cluster/Serotype-Specific Gene Markers', Frontiers in Cellular and Infection Microbiology, 11, pp. 772574,

Journal articles | 2021

Cheney L; Payne M; Kaur S; Lan R, 2021, 'Multilevel genome typing describes short- And long-term vibrio cholerae molecular epidemiology', Msystems, 6, pp. 10.1128/msystems.00134 - 10.1128/msystems.00121,

Journal articles | 2021

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2021, 'Elucidation of global and national genomic epidemiology of salmonella enterica serovar enteritidis through multilevel genome typing', Microbial Genomics, 7, pp. 000605,

Journal articles | 2021

Luo L; Wang H; Payne M; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, 2021, 'Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance', Microbial Genomics, 7, pp. 000710,

Journal articles | 2021

Luo L; Wang H; Payne MJ; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; Yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, 2021, 'Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance', Microbial Genomics, 7, pp. 000710,

Journal articles | 2021

Luo Y; Wang H; Liang J; Qian H; Ye J; Chen L; Yang X; Chen Z; Wang F; Octavia S; Payne M; Song X; Jiang J; Jin D; Lan R, 2021, 'Population Structure and Multidrug Resistance of Non-O1/Non-O139 Vibrio cholerae in Freshwater Rivers in Zhejiang, China', Microbial Ecology, 82, pp. 319 - 333,

Journal articles | 2021

Luu LDW; Payne M; Zhang X; Luo L; Lan R, 2021, 'Development and comparison of novel multiple cross displacement amplification (MCDA) assays with other nucleic acid amplification methods for SARS-CoV-2 detection', Scientific Reports, 11, pp. 1873,

Journal articles | 2021

Payne M; Octavia S; Luu LDW; Sotomayor-Castillo C; Wang Q; Tay ACY; Sintchenko V; Tanaka MM; Lan R, 2021, 'Enhancing genomics-based outbreak detection of endemic salmonella enterica serovar typhimurium using dynamic thresholds', Microbial Genomics, 7, pp. 000310,

Journal articles | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, 'Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping', Microbial Genomics, 7, pp. 000704,

Journal articles | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, 'Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping', , pp. 2021.01.30.428723,

Journal articles | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, 'Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping', Microbial Genomics, 7, pp. 000704,

Journal articles | 2020

Payne M; Kaur S; Wang Q; Hennessy D; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2020, 'Multilevel genome typing: Genomics-guided scalable resolution typing of microbial pathogens', Eurosurveillance, 25, pp. 1900519,

Journal articles | 2020

Wai Luu LD; Payne M; Zhang X; Luo L; Lan R, 2020, 'Development and comparison of a novel multiple cross displacement amplification (MCDA) assay with other nucleic acid amplification methods for SARS-CoV-2 detection', ,

Journal articles | 2020

Zhang X; Payne M; Wang Q; Sintchenko V; Lan R, 2020, 'Highly Sensitive and Specific Detection and Serotyping of Five Prevalent Salmonella Serovars by Multiple Cross-Displacement Amplification', Journal of Molecular Diagnostics, 22, pp. 708 - 719,

Journal articles | 2019

Luo L; Chen X; Payne M; Cao X; Wang Y; Zhang J; Deng J; Wang H; Zhang Z; Li Q; Lan R; Ye C, 2019, 'Case report: Whole genome sequencing based investigation of maternal-neonatal listeriosis in Sichuan, China', BMC Infectious Diseases, 19, pp. 893,

Journal articles | 2019

Payne M; Weerasinghe H; Tedja I; Andrianopoulos A, 2019, 'A unique aspartyl protease gene expansion in Talaromyces marneffei plays a role in growth inside host phagocytes', Virulence, 10, pp. 277 - 291,

Journal articles | 2019

Xu Z; Octavia S; Luu LDW; Payne M; Timms V; Tay CY; Keil AD; Sintchenko V; Guiso N; Lan R, 2019, 'Pertactin-negative and filamentous hemagglutinin-negative Bordetella pertussis, Australia, 2013-2017', Emerging Infectious Diseases, 25, pp. 1196 - 1199,

Journal articles | 2019

Xu Z; Wang Z; Luan Y; Li Y; Liu X; Peng X; Octavia S; Payne M; Lan R, 2019, 'Genomic epidemiology of erythromycin-resistant Bordetella pertussis in China', Emerging Microbes and Infections, 8, pp. 461 - 470,

Journal articles | 2019

Zhang X; Payne M; Lan R, 2019, 'In silico identification of serovar-specific genes for salmonella serotyping', Frontiers in Microbiology, 10, pp. 835,

Journal articles | 2016

Weerasinghe H; Payne M; Beard S; Andrianopoulos A, 2016, 'Organism-wide studies into pathogenicity and morphogenesis in Talaromyces marneffei', Future Microbiology, 11, pp. 511 - 526,

Journal articles | 2013

Pasricha S; Payne M; Canovas D; Pase L; Ngaosuwankul N; Beard S; Oshlack A; Smyth GK; Chaiyaroj SC; Boyce KJ; Andrianopoulos A, 2013, 'Cell-type-specific transcriptional profiles of the dimorphic pathogen penicillium marneffei reflect distinct reproductive, morphological, and environmental demands', G3 Genes Genomes Genetics, 3, pp. 1997 - 2014,

Journal articles | 2012

Boyce KJ; Bugeja HE; Weerasinghe H; Payne MJ; Schreider L, 2012, 'Strategies for the molecular genetic manipulation and visualization of the human fungal pathogen Penicillium marneffei', Fungal Genetics Reports, 59, pp. 1 - 12,

Journal articles | 2012

Bugeja HE; Boyce KJ; Weerasinghe H; Beard S; Jeziorowski A; Pasricha S; Payne M; Schreider L; Andrianopoulos A, 2012, 'Tools for high efficiency genetic manipulation of the human pathogen Penicillium marneffei', Fungal Genetics and Biology, 49, pp. 772 - 778,

Working Papers

Other

Preprints | 2024

Cheney L; Payne M; Kaur S; McKew G; Lan R, 2024, CharacterisingStaphylococcus aureusgenomic epidemiology with Multilevel Genome Typing,

Preprints | 2024

Kaur S; Payne M; Partridge S; Sintchenko V; Lan R, 2024, A dissection of the genomic antimicrobial resistance epidemiology ofSalmonellaTyphimurium,

Preprints | 2024

Payne M; Hu D; Wang Q; Sullivan G; Graham R; Rathnayake I; Jennison A; Sintchenko V; Lan R, 2024, DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance,

Preprints | 2023

Cheney L; Payne M; Kaur S; Lan R, 2023, SaLTy: a novelStaphylococcus aureusLineage Typer,

Preprints | 2023

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, Genomic epidemiology and multilevel genome typing ofBordetella pertussis,

Preprints | 2022

Kaur S; Payne M; Luo L; Octavia S; Tanaka M; Sintchenko V; Lan R, 2022, MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens,

Preprints | 2022

Luo L; Payne M; Wang Q; Kaur S; Rathnayake I; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka M; Jennison A; Sintchenko V; Lan R, 2022, Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis,

Preprints | 2021

Luo L; Wang H; Payne M; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, 2021, Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance,

Preprints | 2021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping,

Preprints | 2020

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka M; Sintchenko V; Lan R, 2020, Elucidation of global and local genomic epidemiology ofSalmonella entericaserovar Enteritidis through multilevel genome typing,

Preprints | 2020

Wai Luu LD; Payne M; Zhang X; Luo L; Lan R, 2020, Development and comparison of a novel multiple cross displacement amplification (MCDA) assay with other nucleic acid amplification methods for SARS-CoV-2 detection,

Conference Papers | 2018

Andrianopoulos A; Weerasinghe H; Payne M, 2018, 'Morphological and metabolic adaptation to environmental conditions by Talaromyces marneffei and its role in the host.', in MEDICAL MYCOLOGY, OXFORD UNIV PRESS, pp. S63 - S63,

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